2024-2025 Czech Republic Cup | Rank | Player | Country | Team | Goals | Home Goals | Away Goals | Detail |
| 1 | Jiri Sodoma | Czech Republic | Viktoria Zizkov | 5 | 0 | 5 | detail |
| 2 | Roman Potocny | Czech Republic | Brno | 4 | 0 | 4 | detail |
| 3 | David Cerny | Czech Republic | Usti nad Labem | 4 | 2 | 2 | detail |
| 4 | Jan Mach | Czech Republic | FK MAS Taborsko | 4 | 0 | 4 | detail |
| 5 | Matyas Kozak | Czech Republic | Synot Slovacko | 3 | 0 | 3 | detail |
| 6 | Jan Kliment | Czech Republic | Sigma Olomouc | 3 | 1 | 2 | detail |
| 7 | Zviad Natchkebia | Georgia | Tescoma Zlin | 3 | 0 | 3 | detail |
| 8 | Tomas Buchvaldek | Czech Republic | Hlucin | 3 | 1 | 2 | detail |
| 9 | Jan Kopic | Czech Republic | FC Viktoria Plzen | 3 | 2 | 1 | detail |
| 10 | Daniel Richter | Czech Republic | Usti nad Labem | 3 | 2 | 1 | detail |
| 11 | Damani Camara | USA | SK Slovan Varnsdorf | 3 | 0 | 3 | detail |
| 12 | Petr Pejsa | Czech Republic | Admira Praha | 3 | 0 | 3 | detail |
| 13 | Vit Novotny | Czech Republic | Sokol Brozany | 3 | 1 | 2 | detail |
| 14 | Ondrej Novotny | Czech Republic | FK MAS Taborsko | 3 | 0 | 3 | detail |
| 15 | Leo Gajdosik | Czech Republic | SSK Bilovec | 3 | 2 | 1 | detail |
| 16 | Vojtech Cech | Czech Republic | FC Kurim | 3 | 3 | 0 | detail |
| 17 | Josef Jakab | Czech Republic | SK Kladno | 3 | 0 | 3 | detail |
| 18 | Mojmir Chytil | Czech Republic | Slavia Praha | 2 | 1 | 1 | detail |
| 19 | Ludek Pernica | Czech Republic | Brno | 2 | 0 | 2 | detail |
| 20 | Dominik Gembicky | Czech Republic | Viktoria Zizkov | 2 | 0 | 2 | detail |
| 21 | Jakob Tranziska | Germany | Dynamo Ceske Budejovice | 2 | 0 | 2 | detail |
| 22 | Helio Alberto Delgado Silva,Papalele | Cape Verde | Opava | 2 | 0 | 2 | detail |
| 23 | Vinny Nkwinga | Cameroon | Marila Pribram | 2 | 0 | 2 | detail |
| 24 | Filip Ret | Czech Republic | Marila Pribram | 2 | 0 | 2 | detail |
| 25 | Tadeas Vachousek | Czech Republic | Teplice | 2 | 0 | 2 | detail |
| 26 | Lukas Kania | Czech Republic | Hlucin | 2 | 0 | 2 | detail |
| 27 | Daniel Vasulin | Czech Republic | FC Viktoria Plzen | 2 | 0 | 2 | detail |
| 28 | Prince Emmanuel | Nigeria | Vitkovice | 2 | 2 | 0 | detail |
| 29 | Marek Cervenka | Czech Republic | Usti nad Labem | 2 | 2 | 0 | detail |
| 30 | Lukas Holik | Czech Republic | Slavia Kromeriz | 2 | 1 | 1 | detail |